[INFO] cloning repository https://github.com/keithyin/xpoa
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/xpoa" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fxpoa", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fxpoa'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] ed8b40eed77da3930c6ab4c385cd01d4643fc5b6
[INFO] fixing keithyin/xpoa against try#622891a4e29178280638a6b63a8908bde2c0c854+cargoflags=-Zfix-edition=start=2015 for pr-157817-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Fxpoa" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/keithyin/xpoa
[INFO] finished tweaking git repo https://github.com/keithyin/xpoa
[INFO] tweaked toml for git repo https://github.com/keithyin/xpoa written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/keithyin/xpoa on toolchain 622891a4e29178280638a6b63a8908bde2c0c854
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/keithyin/xpoa already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3a6becf2bc8dde7f3fa57ede90e4f284e72d296796fc446bbb1e2c7cc0530151" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 97958fc1cb0298c75723bc76022edc3e0bf103f54b132cbfccf2da96ce12b0a9
[INFO] running `Command { std: "docker" "start" "97958fc1cb0298c75723bc76022edc3e0bf103f54b132cbfccf2da96ce12b0a9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "97958fc1cb0298c75723bc76022edc3e0bf103f54b132cbfccf2da96ce12b0a9" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "97958fc1cb0298c75723bc76022edc3e0bf103f54b132cbfccf2da96ce12b0a9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=" "-e" "RUSTDOCFLAGS=" "-w" "/opt/rustwide/workdir" "--user" "0:0" "97958fc1cb0298c75723bc76022edc3e0bf103f54b132cbfccf2da96ce12b0a9" "/opt/rustwide/cargo-home/bin/cargo" "+622891a4e29178280638a6b63a8908bde2c0c854" "fix" "--allow-no-vcs" "--allow-dirty" "--frozen" "--all" "--all-targets" "--message-format=json" "-Zfix-edition=start=2015", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.183
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling xpoa v0.4.0 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `xpoa v0.4.0 (/opt/rustwide/workdir)`
[INFO] [stderr] note: To improve backtraces for build dependencies, set the CARGO_PROFILE_DEV_BUILD_OVERRIDE_DEBUG=true environment variable to enable debug information generation.
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/xpoa-1c3ddfb51fbe95d3/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   -- The CXX compiler identification is GNU 13.3.0
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ - skipped
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- Configuring done (0.6s)
[INFO] [stderr]   -- Generating done (0.0s)
[INFO] [stderr]   -- Build files have been written to: /opt/rustwide/target/debug/build/xpoa-90865a6b9abf794b/out/cpp_code/build
[INFO] [stderr]   [  5%] Building CXX object CMakeFiles/xpoa.dir/AlignConfig.cpp.o
[INFO] [stderr]   [ 11%] Building CXX object CMakeFiles/xpoa.dir/Interval.cpp.o
[INFO] [stderr]   [ 16%] Building CXX object CMakeFiles/xpoa.dir/PoaGraphImpl.cpp.o
[INFO] [stderr]   [ 22%] Building CXX object CMakeFiles/xpoa.dir/PoaAlignmentMatrix.cpp.o
[INFO] [stderr]   [ 27%] Building CXX object CMakeFiles/xpoa.dir/Mutation.cpp.o
[INFO] [stderr]   [ 33%] Building CXX object CMakeFiles/xpoa.dir/PoaConsensus.cpp.o
[INFO] [stderr]   [ 38%] Building CXX object CMakeFiles/xpoa.dir/PoaDraft.cpp.o
[INFO] [stderr]   [ 44%] Building CXX object CMakeFiles/xpoa.dir/PoaGraph.cpp.o
[INFO] [stderr]   [ 50%] Building CXX object CMakeFiles/xpoa.dir/PoaGraphTraversals.cpp.o
[INFO] [stderr]   [ 55%] Building CXX object CMakeFiles/xpoa.dir/RangeFinder.cpp.o
[INFO] [stderr]   [ 61%] Building CXX object CMakeFiles/xpoa.dir/RangeFinderV1.cpp.o
[INFO] [stderr]   [ 66%] Building CXX object CMakeFiles/xpoa.dir/RangeFinderV2.cpp.o
[INFO] [stderr]   [ 72%] Building CXX object CMakeFiles/xpoa.dir/Sequence.cpp.o
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   /opt/rustwide/target/debug/build/xpoa-90865a6b9abf794b/out/cpp_code/Sequence.cpp: In function 'char PacBio::Data::Complement(char)':
[INFO] [stderr]   /opt/rustwide/target/debug/build/xpoa-90865a6b9abf794b/out/cpp_code/Sequence.cpp:53:49: error: 'uint8_t' does not name a type
[INFO] [stderr]      53 |     const char result = lookupTable[static_cast<uint8_t>(base)];
[INFO] [stderr]         |                                                 ^~~~~~~
[INFO] [stderr]   /opt/rustwide/target/debug/build/xpoa-90865a6b9abf794b/out/cpp_code/Sequence.cpp:10:1: note: 'uint8_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
[INFO] [stderr]       9 | #include "Sequence.h"
[INFO] [stderr]     +++ |+#include <cstdint>
[INFO] [stderr]      10 | 
[INFO] [stderr]   gmake[2]: *** [CMakeFiles/xpoa.dir/build.make:244: CMakeFiles/xpoa.dir/Sequence.cpp.o] Error 1
[INFO] [stderr]   gmake[2]: *** Waiting for unfinished jobs....
[INFO] [stderr]   In file included from /opt/rustwide/target/debug/build/xpoa-90865a6b9abf794b/out/cpp_code/RangeFinderV2.cpp:13:
[INFO] [stderr]   /opt/rustwide/target/debug/build/xpoa-90865a6b9abf794b/out/cpp_code/SparseAlignment.h:12:10: fatal error: seqan/align.h: No such file or directory
[INFO] [stderr]      12 | #include <seqan/align.h>
[INFO] [stderr]         |          ^~~~~~~~~~~~~~~
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   gmake[2]: *** [CMakeFiles/xpoa.dir/build.make:230: CMakeFiles/xpoa.dir/RangeFinderV2.cpp.o] Error 1
[INFO] [stderr]   In file included from /opt/rustwide/target/debug/build/xpoa-90865a6b9abf794b/out/cpp_code/RangeFinderV1.cpp:13:
[INFO] [stderr]   /opt/rustwide/target/debug/build/xpoa-90865a6b9abf794b/out/cpp_code/SparseAlignment.h:12:10: fatal error: seqan/align.h: No such file or directory
[INFO] [stderr]      12 | #include <seqan/align.h>
[INFO] [stderr]         |          ^~~~~~~~~~~~~~~
[INFO] [stderr]   compilation terminated.
[INFO] [stderr]   gmake[2]: *** [CMakeFiles/xpoa.dir/build.make:216: CMakeFiles/xpoa.dir/RangeFinderV1.cpp.o] Error 1
[INFO] [stderr]   gmake[1]: *** [CMakeFiles/Makefile2:85: CMakeFiles/xpoa.dir/all] Error 2
[INFO] [stderr]   gmake: *** [Makefile:91: all] Error 2
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' (106) panicked at build.rs:9:9:
[INFO] [stderr]   check command status fail. build
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x5b074fdb8e58 - std[5c0eaf5403f5fa91]::backtrace_rs::backtrace::libunwind::trace
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9
[INFO] [stderr]      1:     0x5b074fdb8e58 - std[5c0eaf5403f5fa91]::backtrace_rs::backtrace::trace_unsynchronized::<std[5c0eaf5403f5fa91]::sys::backtrace::_print_fmt::{closure#1}>
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14
[INFO] [stderr]      2:     0x5b074fdb8e58 - std[5c0eaf5403f5fa91]::sys::backtrace::_print_fmt
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/sys/backtrace.rs:74:9
[INFO] [stderr]      3:     0x5b074fdb8e58 - <<std[5c0eaf5403f5fa91]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[6b4415987d471b61]::fmt::Display>::fmt
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/sys/backtrace.rs:44:26
[INFO] [stderr]      4:     0x5b074fdca32a - <core[6b4415987d471b61]::fmt::rt::Argument>::fmt
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/core/src/fmt/rt.rs:152:76
[INFO] [stderr]      5:     0x5b074fdca32a - core[6b4415987d471b61]::fmt::write
[INFO] [stderr]      6:     0x5b074fdbcf52 - std[5c0eaf5403f5fa91]::io::default_write_fmt::<std[5c0eaf5403f5fa91]::sys::stdio::unix::Stderr>
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/io/mod.rs:623:11
[INFO] [stderr]      7:     0x5b074fdbcf52 - <std[5c0eaf5403f5fa91]::sys::stdio::unix::Stderr as std[5c0eaf5403f5fa91]::io::Write>::write_fmt
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/io/mod.rs:1661:13
[INFO] [stderr]      8:     0x5b074fd9dc96 - <std[5c0eaf5403f5fa91]::sys::backtrace::BacktraceLock>::print
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/sys/backtrace.rs:47:9
[INFO] [stderr]      9:     0x5b074fd9dc96 - std[5c0eaf5403f5fa91]::panicking::default_hook::{closure#0}
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/panicking.rs:292:27
[INFO] [stderr]     10:     0x5b074fdb4461 - std[5c0eaf5403f5fa91]::panicking::default_hook
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/panicking.rs:319:9
[INFO] [stderr]     11:     0x5b074fdb461b - std[5c0eaf5403f5fa91]::panicking::panic_with_hook
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/panicking.rs:814:13
[INFO] [stderr]     12:     0x5b074fd9dd52 - std[5c0eaf5403f5fa91]::panicking::panic_handler::{closure#0}
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/panicking.rs:687:13
[INFO] [stderr]     13:     0x5b074fd92fb9 - std[5c0eaf5403f5fa91]::sys::backtrace::__rust_end_short_backtrace::<std[5c0eaf5403f5fa91]::panicking::panic_handler::{closure#0}, !>
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/sys/backtrace.rs:182:18
[INFO] [stderr]     14:     0x5b074fd9e6bd - __rustc[33ffaff69ac0afe3]::rust_begin_unwind
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/panicking.rs:678:5
[INFO] [stderr]     15:     0x5b074fdcaa9c - core[6b4415987d471b61]::panicking::panic_fmt
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/core/src/panicking.rs:80:14
[INFO] [stderr]     16:     0x5b074fd75807 - build_script_build[3ecd7a16f746802c]::check_command_status
[INFO] [stderr]     17:     0x5b074fd76680 - build_script_build[3ecd7a16f746802c]::main
[INFO] [stderr]     18:     0x5b074fd78363 - <fn() as core[6b4415987d471b61]::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]     19:     0x5b074fd755e6 - std[5c0eaf5403f5fa91]::sys::backtrace::__rust_begin_short_backtrace::<fn(), ()>
[INFO] [stderr]     20:     0x5b074fd75759 - std[5c0eaf5403f5fa91]::rt::lang_start::<()>::{closure#0}
[INFO] [stderr]     21:     0x5b074fdb3847 - <&dyn core[6b4415987d471b61]::ops::function::Fn<(), Output = i32> + core[6b4415987d471b61]::panic::unwind_safe::RefUnwindSafe + core[6b4415987d471b61]::marker::Sync as core[6b4415987d471b61]::ops::function::FnOnce<()>>::call_once
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/core/src/ops/function.rs:287:21
[INFO] [stderr]     22:     0x5b074fdb3847 - std[5c0eaf5403f5fa91]::panicking::catch_unwind::do_call::<&dyn core[6b4415987d471b61]::ops::function::Fn<(), Output = i32> + core[6b4415987d471b61]::panic::unwind_safe::RefUnwindSafe + core[6b4415987d471b61]::marker::Sync, i32>
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/panicking.rs:575:43
[INFO] [stderr]     23:     0x5b074fdb3847 - std[5c0eaf5403f5fa91]::panicking::catch_unwind::<i32, &dyn core[6b4415987d471b61]::ops::function::Fn<(), Output = i32> + core[6b4415987d471b61]::panic::unwind_safe::RefUnwindSafe + core[6b4415987d471b61]::marker::Sync>
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/panicking.rs:543:19
[INFO] [stderr]     24:     0x5b074fdb3847 - std[5c0eaf5403f5fa91]::panic::catch_unwind::<&dyn core[6b4415987d471b61]::ops::function::Fn<(), Output = i32> + core[6b4415987d471b61]::panic::unwind_safe::RefUnwindSafe + core[6b4415987d471b61]::marker::Sync, i32>
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/panic.rs:359:14
[INFO] [stderr]     25:     0x5b074fdb3847 - std[5c0eaf5403f5fa91]::rt::lang_start_internal::{closure#0}
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/rt.rs:175:24
[INFO] [stderr]     26:     0x5b074fdb3847 - std[5c0eaf5403f5fa91]::panicking::catch_unwind::do_call::<std[5c0eaf5403f5fa91]::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/panicking.rs:575:43
[INFO] [stderr]     27:     0x5b074fdb3847 - std[5c0eaf5403f5fa91]::panicking::catch_unwind::<isize, std[5c0eaf5403f5fa91]::rt::lang_start_internal::{closure#0}>
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/panicking.rs:543:19
[INFO] [stderr]     28:     0x5b074fdb3847 - std[5c0eaf5403f5fa91]::panic::catch_unwind::<std[5c0eaf5403f5fa91]::rt::lang_start_internal::{closure#0}, isize>
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/panic.rs:359:14
[INFO] [stderr]     29:     0x5b074fdb3847 - std[5c0eaf5403f5fa91]::rt::lang_start_internal
[INFO] [stderr]                                  at /rustc/622891a4e29178280638a6b63a8908bde2c0c854/library/std/src/rt.rs:171:5
[INFO] [stderr]     30:     0x5b074fd74f01 - std[5c0eaf5403f5fa91]::rt::lang_start::<()>
[INFO] [stderr]     31:     0x5b074fd783f5 - main
[INFO] [stderr]     32:     0x7dc7a72e41ca - <unknown>
[INFO] [stderr]     33:     0x7dc7a72e428b - __libc_start_main
[INFO] [stderr]     34:     0x5b074fd74525 - _start
[INFO] [stderr]     35:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "97958fc1cb0298c75723bc76022edc3e0bf103f54b132cbfccf2da96ce12b0a9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "97958fc1cb0298c75723bc76022edc3e0bf103f54b132cbfccf2da96ce12b0a9", kill_on_drop: false }`
[INFO] [stdout] 97958fc1cb0298c75723bc76022edc3e0bf103f54b132cbfccf2da96ce12b0a9
